SubtiBank SubtiBank
ydjN [2018-06-29 14:58:14]
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ydjN [2018-06-29 14:58:14]

unknown
locus
BSU06260
pI
7.35
mw
39.55 kDa
protein length
348 aa Sequence Blast
gene length
1044 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 6|Groups of genes] → [category|SW 6.12|Secreted proteins]
  • [category|SW 6|Groups of genes] → [category|SW 6.7|Proteins of unknown function]

    • Gene

    Coordinates
    679,827 → 680,873

    Expression and Regulation

    Operons

    genes
    [gene|18ED48E99D87748B2EBD6001EFDF1D3D91535ABF|ydjM]-[gene|6B93DA610D4D86A5D4E53190999FB0E4E10AE8E5|ydjN]
    description
    [Pubmed|22383849]

    regulatory mechanism

  • [protein|7F340423A34CE40D1F1AA8D373F7C4B859A6496D|WalR]: activation, [pubmed|17581128], in [regulon|7F340423A34CE40D1F1AA8D373F7C4B859A6496D|WalR regulon]
  • [protein|638D6D2FCCA2A167EFED05CB4E60C2D78D5319AE|PhoP]: activation, [pubmed|20059685], in [regulon|638D6D2FCCA2A167EFED05CB4E60C2D78D5319AE|PhoP regulon]

    • regulation

  • activated by [protein|7F340423A34CE40D1F1AA8D373F7C4B859A6496D|WalR] [Pubmed|17581128]

    • additional information

  • the terminator is [protein|8887ADC77C43F21CD375BDAA4D38E940786DAD4F|NusA]-dependent [ http://www.nature.com/articles/nmicrobiol20157 Reference]
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    Biological materials

    Mutant

  • MGNA-C221 (ydjN::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2219 NBRP B. subtilis, Japan]
  • BKE06260 (Δ[gene|6B93DA610D4D86A5D4E53190999FB0E4E10AE8E5|ydjN]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE06260 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCTTTTATCTCCACCAAT, downstream forward: _UP4_TAATAAAAACCACTCGGCAT
  • BKK06260 (Δ[gene|6B93DA610D4D86A5D4E53190999FB0E4E10AE8E5|ydjN]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK06260 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCTTTTATCTCCACCAAT, downstream forward: _UP4_TAATAAAAACCACTCGGCAT